Showing posts with label biology. Show all posts
Showing posts with label biology. Show all posts

Saturday, 20 June 2009

Controlling Love

A pet provides a means of control. We want to be able to control nature around us, not to live in harmony. We want to find a way to conquer- even if it means changing the very genetic code of wild animals to tame them. We try to to control animals emotionally, projecting our own thoughts and feelings upon them, as a recent study with dogs convincingly demonstrated. If the owner thought the dog had done something, the dog looked guilty to the owner. If the owner scolded the animal, the dog looked more guilty to everyone who observed the dog. If the dog had done nothing wrong, and was scolded, he looked most guilty.

This stems from communication barriers between dramatically different cultures. If I can mean one thing and communicate another to a human from a different culture, how much more dramatically will be the divergence in communication across species lines! Consider the simple hug, of arms around the neck, that we primates love to do. To the dog, even the pet dog, this is an act of aggression, going after the vulnerable jugular veins, and it is only with great effort that our tame wolves are able to control themselves- as evidenced by the enlarged whitening of their eyes in fear response. (Incidentally, a physical trait that we two species do share.) Thus love from one species communicates as attack to another.

But we are the dominant "wolf" in the pack, and we lay the ground rules. The dog tries desperately to follow them, and is happily assisted by some 30,000 years of selective breeding to more effectively read human expressions and emotions. Indeed, we have not been so well bred to them. So when the dog sees us angry and demanding that they have done something wrong, the dog knows the proper response to ameliorate the head wolf: act ashamed, or rather, lower the head and look up in the submissive posture- whatever it takes to make us happy. When the human sees this, usually, the anger begins to dissipate, for the human then feels they have asserted themselves to some degree over nature, have controlled something in their life.

We desperately want to believe our dogs and other pets are intelligent and can understand us. But intelligence is relative. They aren't intelligent when compared to whales, primates, or pigs. They are quite intelligent when compared to rodents. But that's not a level of intelligence that extends to the knowledge of good and evil, to the awareness that they have done something inherently wrong. It is an intelligence that is able to avoid discomfort and pursue comfort, regardless of inherent morality. Comfort comes from doing what the pack leader wants, what the human owner wants.

For us, comfort comes from loving, and being loved. Of course, the best way to do this is with humans. But for some, it just doesn't seem to work out. Because humans are messy. You can't control them, like you can a dog. When you try to, it's bad all around. A healthy human relationship is one without control, but with learning to love that which does not obey your every command, and should not obey it. Animals, on the other hand, can be taught to do whatever we want, or nearly everything. It is decidedly more convenient. It's a lot less messy. It's a lot less love, in the deep sense of agape, loving the unlovable.

And so, just as we all create God in our own image, we do the same to our pets. We look for ways to make them more human, to respond the way humans respond, or rather, the way one particular human responds- ourselves. We want to see a mirror image with fangs and fuzzy fur, that cocks it's head cutely and responds as we would want to respond. It is like a Bizzaro World reapplication of Christ's relationship principle. Not "Do to others as you would have them do to you," but "Expect others to do as you would do."

And this is not to say that this is in any way wrong, when applied to animals. But let us realize what we are doing, and realize what are reasonable expectations of our pets. Yes, our dog can learn to behave and follow our rules. It can not feel wrong, or be ashamed, or engage in a meaningful relationship. What we see there is our own projections of reality, and our pursuit of that is merely incestuous relationship, a bird enamored with its own reflection.

Tuesday, 9 June 2009

An Inherent Right to Freedom?

?As much as physics is an inherently Arminianist science, so is biology inherently determinist. As a biologist, I believe everything is determined by my genetic code and my environment. This nicely dovetails with my belief in predestination, wherein I feel Calvin didn't go far enough but Augustine's ideas are right on (though sadly not completely accepted by the Roman Church). So it is with pleasure that I read another study affirming my perspective- the MAOA gene is found to be linked to aggression in males, and is more prevalent in more violent societies.

We often want to believe we are free to make our own decisions, especially in Western societies, especially in America. But to what extent is this true? We will trot out the arguments that one can not be held accountable for their actions if they did not freely make them- but if I go through every step of a decision, am I not as culpable, even if it can be found what actually motivated that decision? If I have a genetic disposition to alcoholism and grow up in a heavy car culture, it is more likely that I will drink and drive- and yet I am fully responsible when I do so.

And yet, excessive drinking, or drinking and driving, or adultery, or violence- all of these are sins. They are all missing the mark, all not hitting the target that God has for us. So this sin, this tendency, that we all have, in different ways, is written into our genetic code. And since many studies show the same actions in other primates, we can be fairly well assured that this tendency in our genetic code predates our existence as a species, predates the humans who are Homo sapiens - "wise men" - with the ability to discern good and evil. That which we did without the knowledge of good and evil (note the text never says the far more reasonable "knowledge of evil") was in no way evil, for we were amoral, not immoral, not knowing good and evil. Once we obtained that knowledge, once our brains reached that magical point of being able to differentiate, we became culpable.

Thus our actions and very sins are predetermined, and every year we learn new ways in which our genes have dictated our lives. Does this mean that the individual who discovers they have MAOA should just give up- that there's no hope, and they will always be violent? No! It means they are now aware that there is something inside them making them violent, and they must work on it. Or the society with the greater prevalence of MAOA now realizes they have a greater work to do in that society. This is just as when we all learn that we have a certain tendency, we now know the area to work on to pursue spiritual growth, and salvation sola morphe, striving to change to be more like Christ, as he called us to do, picking up our crosses to willingly suffer at the hands of violence without being violent ourselves.

And if they do the concerted effort to change, and resist their genetic tendency, that resistance will have been predetermined too.

But this is not enough. It is unfair to those with MAOA, or any such gene. (For we all likely have some sort of detrimental gene with a tendency towards sin, and more than one!) Jesus speaks quite forcibly against violence, even calling the possession of weapons a sign of wickedness. But that doesn't mean there is no place for war and violence in Christianity. On the contrary! For Paul says, "Our weapons are not against flesh and blood, but against the spiritual powers." As Christians, we are called to continuously fight against the demons. This involves prayer, yes, but the Pauline passage makes it clear that this fight also involves righteousness and discipline, truth and readiness, listening to the Spirit with faith, and love.

What is needed is a transference of the enemy, of the other, for those afflicted with MAOA. In this way, their resonance of the curse becomes a blessing for the entire body, as Jesus did with his death on the cross. This was the same transference that the early Christians went through, in that violent time of first century Roman rule, when they called those who did not believe pagoni, meaning "the civilians". The term "Pagoni" was not an insult or attack, but rather an indication of who we, as Christians, are called to protect, not through force of arms, never through force of arms, but through force of prayer and love.

Thus those afflicted with MAOA now become those empowered by it, with Christ's redemption of even a gene for violence, as they come to the forefront of spiritual warfare, working against the powers of evil, and for the care of those they once might have attacked.

Monday, 8 June 2009

Who wants to live forever?

The great band Queen once had a song "Who Wants to Live Forever", notably played as the theme song to the Highlander TV Series. (There should have been only one.) In Highlander, there were Immortals who could only be killed by having their heads chopped off. The drawback is they were incapable of having children.

Geneticists have recently discovered a mutant line of nematodes wherein their non-sex cells (somatic cells) behave like sex cells. (Nematodes are round worms that are the most populous species on Earth, present in nearly every living organism, to such an extent that if all other organisms were removed, the general outline of the organisms would be visible from the nematodes within them. Yes, that means you, dear reader.) This leads to stronger cells throughout the nematode, ensuring their longevity, which in turn fits with some hypothesis that organisms make a choice between reproduction and eternal life, wherein organisms get old because they are investing in creating and raising young.

So here's the question: if you could choose, to be like the Immortals or mutant nematodes, would you choose to live forever, if it meant you could never have offspring? Granted, this is really only a viable question for those who don't have kids, since of course any parent is going to say they wanted to have their kids. And for many, they believe they will live forever, in new bodies, in the New Earth and Kingdom. But my question is, if you could live forever now, in this body, but never have offspring- would you choose to? I'd be interested in hearing both from those who believe in eternal life and those who don't.

As for me, it's a no-brainer. I'd far rather have the kids, even if it meant dying in the next couple years.

Friday, 29 May 2009

Creating Life is Easy

There's a short miniseries on TV these days, Impact, suggesting that the moon is hit by a Brown Dwarf, causing the moon to hit the Earth and destroy it, unless someone saves the day. The finale plays next Sunday, and I'm really hoping they don't repeat the tired last ditch save, and actually destroy the Earth this time. Because, really, there is no way that we could remove a Brown Dwarf from the moon and reverse the moon's trajectory enough to save the planet, assuming the Brown Dwarf had hit the moon and forced the moon towards us, and I'd like there to be some semblance of science in this movie. Because if the moon is headed for a collision with us, that's it- just like when the Mars-size body ran into us 4.5 bya (billion years ago), creating the Earth-Moon system. We have no idea what the Earth was like before that point, if there was life, or there was an Earth, because a Mars-size object hitting a Venus-size objects just completely remakes everything.

But it may be that a major bombardment of our planet by giant asteroids wouldn't liquefy the planet, or destroy all of life. I recently contemplated how the extermination of our species is not necessarily a bad thing, that life will find a way, and this study appears to be further thinking along those lines. The Earth was hit by many huge asteroids between 4.4 and 3.9 bya, and it has been assumed that they sterilized the planet. But numerous simulations were run in this recent study, and researchers increased the magnitude of the bombardment by ten times the level that is thought to have occurred, and still all of life wasn't sterilized. In fact, it may well be that this sterilization allowed life to develop- again, death and tragedy being the pathway to life.

More intriguing is that this Heavy Bombardment of the Archean Period may have actually helped life first evolve, providing a haven for creation. This is because of the massive heat energy being put into the open system of Earth, and energy provides what is needed to build the earliest cells. It was previously believed that the asteroids would have destroyed everything, so this energy wouldn't have helped, and the earliest life could have formed was only 3.9 bya. (Our earliest fossils, stromatolites, go back to 3.5 bya.) This string of studies indicates life could have formed 4.4 bya, a mere 100 million years after the final formation of our planet and satellite!

Literal Creationists love to focus on the origin of life, as the holy grail that evolution can't surmount, because it is just too difficult. (Though of course, the origin of life is not a matter of evolution or biology, but rather chemistry.) As I mentioned in an earlier post, we are increasingly finding with studies like this that making life is really not that hard. It has long been though that it took a mere billion years to first form life; now it may be a tenth of that, only 100 million years. Rather, the amazing feat is the formation of multicellular life, waiting some 2.5 to 3.5 billion years, and if Literal Creationists are looking for a deus ex machina of God's intervention, this is really where they should be looking- at the hard stuff! (Though of course, there are good hypothesis for explaining the delay, such as the need for collagen in multicellular life, and collagen requiring a lot of oxygen, and therefore we needed to wait billions of years for cyanobacteria to add that particular poison to the Earth's atmosphere.)

Life is cool, but that is not the amazing part. God's greatest creation is evolution, and I worship at his feet not only penultimately for the creation of life. The far more impressive feat is finding a way to link those cells together.

Wednesday, 6 May 2009

Tragedy is in the Eye of the Beholder

It is an awful thing when people die. But death is not the end; it is always a beginning. A great man once said, "Life will find a way." It is true. No matter what we do to destroy our planet, life will find a way. The issues of Global Warming aren't that we will destroy all life (we won't), or that we will severely limit the amazing diversity of creation (we will, and we are), but rather that we will create an environment that is completely inhospitable for us.

But in death there is life. Not a sparrow falls, that God is not with it, and not a creature dies that it is not returned to the web of life. In every death, there is food for others. In every birth, there is the survival of one sperm among millions, and that life resulted only through the death of those millions. Even in that theological dreadnought, the ichneumon wasp, whose larval children devour the living caterpillar from the inside, it is through death that we find life. This is the message of biology, and the message of Christianity. Without the central tenant of death bringing life, the religion has nothing to offer itself. But this message was woven in the very fabric of the last 3.5 billion years of life, in the thread of our DNA.

These thoughts are prompted by a long-term undersea study of a continuously evolving volcano near Guam. The researchers have found that the newly erupting vents are quick to be colonized by never-before-seen species. The oceans there heat up and acidify, killing thousands of creatures, who rain down as seemingly magical food to the waiting acidophiles below. As our penchant for fossil fuels increasingly acidifies the ocean, this study helps scientists understand how these organisms can adapt.

I am reminded of another recent paper, suggesting that volcanoes or artificial aerosols could be a helpful last-ditch attempt to stave off Global Warming. It may well be that we end up praying to God for great eruptions throughout the planet, as we once had, in order to reverse what we have done. These eruptions could destroy millions of lives, and have been viewed throughout history as the judgment of God- and yet we would be reduced to praying for their onset.

But God may not choose to answer those prayers. We may destroy the planet as a livable place for us, and most of the species. But the organisms left- they will find a way. There will only be a few, but given another hundred million years, and life will have evolved in glorious new ways. We will have destroyed the beauty of creation, but we don't need to be around to see how it rebounds. Who knows if this is not the Apocalypse spoken of by John? We will still enter the Kingdom one day, but we don't need to be the final species that God deals with. He can make the rocks cry out in praise of him- he doesn't need Homo sapiens to do it. Another intelligent species, looking far different from us, can evolve in a few hundred million years, to fill in the niche gap we left. And they may well do a better job of caring for the Garden than we did. It's hard to imagine them doing worse.

Saturday, 21 March 2009

God with us, in our Death

John Haught writes one of the finest works in the emerging genre of evolutionary theology. In it he describes how Christianity is really only fully fulfilled in the light of evolution; and evolution only makes sense fully within the Christian myth. His central point in this is the kenosis, Christ's emptying of himself by becoming man, suffering as a human, and dying on the cross, all for love. Haught extends this out to the central Christian principle of panentheism to answer the troubling question of theodicy. God is not everything, but rather everywhere, and in everything. He then contemplates, how does this then answer the problem of suffering? Evolution did not invent theodicy, but it certainly accentuates it, as there are constant billions of creatures who suffer and die, even if one excludes those lacking in brains and therefore the capacity of suffering. And these countless creatures are doing this long before "sin" entered the world through humanity, and death through sin.

It is answered in part, that God cares for all his creatures- and even those items that he did not breath life into. He cares not only for the moving animals, but the growing trees, and the sitting-and-doing-nothing rocks, waiting to erode. He may care for some creatures more than others, but each and everyone is his creation, and he loves them dearly. And he is present with all of them, at each moment of their lives, no matter how long or short the lives are. And for those capable of suffering, long before the cross, Christ took up their suffering upon himself, suffering with them in every moment, mourning with them, feeling the splagxnizomai compassion of identification and empathy.

The journal Ac­ta Pa­lae­on­to­log­ica Po­lon­ica denotes an extraordinary find in Inner Mongolia in China. An entire herd of young Sin­or­nith­o­mi­mus dongi has been found entrapped in mud. It's rare to find a herd of fossils of one species; rarer still to find some with their last meal in their stomachs, and such details as eye bones preserved, and how they died.

From World Science's summary:

These an­i­mals died a slow death in a mud trap, their
flail­ing only serv­ing to at­tract a near­by
scav­en­ger or preda­tor.

The skele­tons showed si­m­i­lar ex­quis­ite pre­serva­t­ion and were mostly fac­ing the same di­rec­tion, the re­search­ers said, sug­gest­ing that they died to­geth­er and rath­er quick­ly.

Two skele­tons fell one right over the oth­er. Al­though most of their skele­tons lay on a flat hor­i­zon­tal plane, their hind legs were stuck deeply in the mud be­low. Only their hip bones were mis­sing, the likely hand­i­work of a scav­en­ger work­ing over the meat­i­est part of the body bod­ies shortly af­ter the an­i­mals died.

Plung­ing marks in mud sur­round­ing the skele­tons recorded their failed at­tempts to es­cape.

What do we do with such details, of suffering and death? It happened so long ago, 90 million years ago. Like a tragedy on the other side of the world, or watching one unfold in a fictional drama on TV, there is nothing we can do about it. But we can remember,

That God was with them.
He was with them in their suffering, and their
dying.
He knew them, and remembered them.
He was with them in their
coming in,
and their going out.

And he wept with them too.

And we can pray the prayer we always pray, knowing that God's will will be and is and has been done, but we pray to align ourselves with the Spirit of God, that we might follow him in this kenosis:
Lord, be with them, even the least of these your creatures.
As you have been, as you will be, as you shall be, in the enternal now.
And teach me your compassion.

Sunday, 1 March 2009

Tony Campolo's Great Mistake

I don't know that I've ever been more disappointed to read something online. I respect Tony Campolo so much. I have been lead to the Truth by his words so often. I had the pleasure of meeting him at the Pasadena Tab, when I was with the Salvation Army and he lead a conference there. This is a man who has consistently upheld the liberal end of evangelicalism, who calls for us to honor the social justice cries of the Gospel. He has truly helped me come closer to Christ. And now, he publishes this.

If you haven't heard, or haven't read, in the latest issue of Christianity Today, Campolo comes out strongly against the teaching of evolution, or "Darwinism", as he calls it. (Darwinism is a dismissive insult purposely used by Literal Creationists, to try to turn evolution into a religion.) Campolo doesn't come out and say that evolution is wrong, but rather argues that it should not be taught, for the philosophical, social, and religious implications and beliefs of Darwin are monstrous.

I was shocked to read this. Campolo is a level-headed guy, with great reasoning and logic, who speaks for a non-literalist interpretation of the Bible. Yet down the line he quoted the standard Literalist arguments used against evolution. I would have wished that someone else had emailed this article in under his name, and that he was the victim of identity theft, rather than believing that he actually wrote this.

Evolution should or should not be taught in schools because it is the truth, or it is not. What the results are of the theory, or how people use it, are rather irrelevant. The truth shall set you free, regardless of what kind of truth that is. And it just so happens that there is probably no other scientific theory out there that has more evidence for it than the Theory of Evolution. In this article Campolo proved that he might be a great theologian and pastor, but that he knows very little about science.

Campolo claimed that Darwin directly advocated eugenics and the wiping out of inferior races. In truth, Darwin is rather famous for being an abolitionist, and speaking against what would be later known as eugenics. Certainly, the Intelligent Design crowd and the Discovery Institute often quote him out of context to try to say the opposite, ignoring the very next line of the quote where he says (to paraphrase anachronistically), "If eugenics were actually practiced, it would be horrible." And I have no doubt that his beliefs on race aren't up to our standards today- but the same could be said for Lincoln, and more easily said.

Campolo points out another common Literal Creationist argument, that the long title of "Origin of a Species" refers to the preservation of the races. This is true, but the long title of Origin isn't used as much in referencing the work because the word "races" in the 19th century means more than just humans. Indeed, today, the same is still true in biology. My professors would speak of races of seastars, meaning different colors of the same species of Patiria miniata. Since Darwin doesn't really ever get to the evolution of our species in Origin, when he used the term "races", he was quite clearly referring to animals in general.

Campolo brings up the rather tired argument tying the Nazis to evolution, the same one that was brought up in the awful Expelled movie by Ben Stein. These arguments are completely inaccurate every time they are blindly repeated. In Campolo's condemnation of the ethical implications of evolution, he ignored, or more probably had not read, the numerous statements by Darwin that his biological theory should not be used as an ethical paradigm. Yes, the Nazis used evolutionary theory incorrectly to support their beliefs. (Indeed, their distortion of evolution was so great as to advocate the opposite of what evolutionary theory advocates.) They also used a distortion of Christianity to do the same. Campolo knows that Satan loves to distort the truth, and to use lies to advance his agenda. That doesn't mean we should throw out the Christian faith.

Campolo then refers to some others who were tied to the Nazis and evolutionary theory. He refers to Ernst Haekel as German, and therefore to be lumped with the Nazis. This smacks too much of the same stereotyping of peoples that Campolo accuses Darwin of. Haekel made mistakes, but he also contributed a great deal to biology. His drawings of plankton were immaculate and advanced our understanding of them a great deal. Though he fudged his drawings of ontology recapitulating phylogeny, his basic premise was sound and is still followed today. Indeed, it is a foundational principle of EvoDevo Synthesis that has supplanted the NeoDarwinian Synthesis of Evolutionary Theory.

Remember, if evolution is true, and the evidence indicates it is, than it is also a work of God. And for my money, a more powerful God creates in this manner than in the Q snap-your-fingers style of the IDists or Literal Creationists. There are many authors and theologians now who are discussing not only how Christianity and evolution are compatible (see Kenneth Miller), but how the theology and the science of the two are interwoven and dependent on each other (see John Haught, Darrel Falk, and Denis Edwards). Yes, we affirm with Campolo that humans are in God's image, and unique in that way. But if evolution is true, then by attacking evolution, one is attacking the very work of God.

Sunday, 22 February 2009

Tales from the Lorax

Long ago, it was told to us that the care for the land was intimately connected to the care for the other. How we treat another human can not be divorced with how we treat the environment. Saving the land is saving the poor; ending war is protecting nature itself. We see this in the call to the Year of Jubilee, in which the Israelites were called to depend on God by letting the land lie fallow every 7th year. Incidentally, this allowed the land to rejuvenate, and provided a fuller crop in subsequent years- a practice we now know as sound farming. This was a time connected with a restoration of justice, and a return to equity- a practice we now know as socialism. In other places the prophets command to not

add house to house
and join field to field
until there is no more room
and you alone are left in the land.

There was an awareness that greed can become unbounded, and lead to devastation. In a culture that was intensely corporate, so unlike our modern American individualistic society, the concept of being left alone was horrible indeed. It would come about because some had desired "modernity", cities and human construction, taking over nature, and acquiring more and more for themselves at the expense of the masses of the poor. And this was because, as far as we know, the Year of Jubilee was never applied, save perhaps once, under King Josiah. God's people ignored his teachings on equality, poverty, and the environment. And when people refused to give up their land, those with wealth and power would take by force what was not freely given, as predicted by the prophet Samuel.

Years later, another prophet, and more than a prophet, a leader in the Early Church, James, again tied in the concern for the poor with war and strife, as he pointed out that fighting comes from coveting, in turn coming from desiring with wrong motives- just before he has perhaps the strongest condemnation of the rich to be found in the Bible, whom he argues inherently gain their wealth on the backs of the oppressed, through exploitation and murder.

Now we find studies to back up these basic principles. Conservation International has recently found that most of the world's hotspots directly correlate with the areas of the greatest war and killing. Hotspots are places with extreme biodiversity and extreme endangerment- they have a disproportionate number of unique species, that are disproportionately likely to soon go extinct. 81% of major human conflicts in the last fifty years took place in these hotspots.

An intriguing corollary to this is the suggestion that perhaps we innately prefer the areas with greater diversity, hearkening back to something in our ancient, more natural roots before cities, and thus tend to fight over what we don't have, but all want. There may be an evolutionary mandate to desire these spots, but there is a Biblical warning for why we fight over them. Contrary to groups like the Quiverfull Movement, recently highlighted on NPR, the Biblical mandate is not simply to always have more children. For another aspect of I Isaiah's warning on adding land to land until there is no room left is that we can produce too much for the land to sustain- as has happened in the areas where species are most threatened, and the areas of greatest warfare on the planet. When this happens, we desire more for us, and our offspring, and those in our group, be that nationalism or religious bigotry. The easiest way to achieve this is by manipulating others to give us more, as James warns of. When that doesn't work, force of arms is often very convenient.

And the result of all this is always foremost the death of others: the troops of one's own country, the enemy, and the innocent civilians. This is always by far the greatest tragedy of war. But we now see, what we should have always seen, that warfare and murder also leads to the deaths of countless other species of animals and plants. And since we don't exist in a biological vacuum, but are intimately connected with the rest of the planet for our very emotional and physical survival, the continuation of war could lead directly to our own extermination as a species.
This is the way the world ends
This is the way the world ends
This is the way the world ends
Not with a bang but a whimper.

Sunday, 15 February 2009

Unintelligent Designer

Scientists have been able to create a model of what our Australopithecine ancestor's heads looked like- and in particular their jaws. They've found that our ancestor-cousins had much stronger jaws than we do.

I know everything is a trade-off. I know that if they had really strong jaws, then there was probably some detriment too. It's not like evolution dictates that things get better and better, but rather that every organism just gets continually adapted to changing environments. I still want those strong jaws that could crush large hard nuts.

I wish I didn't have lower back problems. But I know I must, as all humans do with age, because I walk on two legs. I know my back works better for a four-legged animal, but evolution works with the material it has. If I walked on four legs, then it's unlikely that I would have developed the intelligence I have to post blogs, for it is believed that intelligence was a byproduct of being able to see for greater distances and judge distance when standing on two legs in the savanna- not to mention the ability to use tools because my hands are freed from walking. If I had a narrower stance, then the vertebrate I have would work just fine on two legs, thank you. But then women would have a narrower stance. (Sure, women could have lower back problems only. But 1) that would be sad and unfair, and 2) evolution works with what it gets.) If women had a narrower stance, then they would be unable to fit our rather bulbous heads through the birth canal. If we had smaller heads, they could do it, on two legs, without back troubles. They could even have fewer birth pains, for they could keep us in longer, and allow us to develop further, as our head wouldn't be too large for the birth canal upon emergence. The trade-off of intelligence is so great, that our heads are not only too big to fit through a narrow birth canal, but we have to be born neotenously, born with fewer developed features than most animals, including other primates. That means we are dependent for post-natal development on our parents, to a ridiculous degree not seen in other mammals or primates.

If God is a smart God, could he have created us with all of these features? Could he have found a way to have us walk on two legs, be smart, give birth without pain, have short gestation periods, have short post-natal development, have working back bones without pain, and yes, most importantly, super strong jaws capable of crushing hard nuts? Yes, of this I have no doubt. The God I believe in could have done that all. So why didn't he? Why didn't he make us with bodies that work better than they do now, with cooler add-on features?

I have forced to conclude he is stupid. He made mistakes. If, that is, I believe he created using a snap-your-fingers-with-a-brilliant-flash-of-light style, like Q of Star Trek. And I just have trouble believing that a stupid God rules the cosmos. If however, I believe that God created using the process of evolution, then suddenly everything falls into place. Evolution is an incredibly beautiful and complex theory, and it would take the truly divine- and truly intelligent- to come up with such a process. And evolution doesn't create novel structures and processes; it works with the material it has, using work-arounds, to develop new features that are in truth new ways of using old features. And I have the confidence that one day, we will receive just such a body as here described, when we receive our new, fully physical bodies, made like Jesus' post-resurrection body, able to do far more than we can now imagine, where there will no longer be any pain or suffering.

So, the choice is: A smart God, using evolution, or a Literal Creationist God, who is rather stupid. You decide.

Thursday, 5 February 2009

What's a half billion years among friends?

This past week, astronomers found the closest extrasolar planet to the size of Earth. It's only twice as big as us, which is significant, because you need something about our size to develop life, and not simply life on an orbital moon. Unfortunately, it's also so close to it's star that its year is only twenty days, and therefore its surface temperature is a balmy 1000°C- so basically a planet of liquid magma. It doesn't matter at that temperature if you've got lots of water; no life is going to develop there.

But I started to think. It wasn't so long ago that our planet was of a similar temperature and composition. Well, 4.5 bya (billion years ago). I suppose that is a stretch of time. And we were able to cool off because there is such a great distance between us and our star; the planet Co­RoT-Exo-7b doesn't have that option. (Yes, extrasolar astronomers have no imagination.) But if it did- if it were further out- it wouldn't be a planet so different than ours, give or take 4 billion years.

We think we are so special, because we have all this life, and advanced life forms to boot. And we are special. Even if life is found elsewhere, it's not everywhere, as our own solar system shows us. But that doesn't give us the right to symbolically lord it over other planets, anymore than we in America can look down at a fledgling democracy in Iraq, forgetting that our government in our first thirteen years collapsed because it was unworkable. Our planet went through great initial turmoil, with some 500 million years of magma and cooling down, before there could even be the beginnings of an inkling for life.
Stromatolites
This is why I never think that life itself is all that amazing. Recently, I looked at some stromatolites so close I could reach and touch them. These are fossils of algal mats from 3.5 bya. That means, it took only half a billion years from molten lava to the first life forms. And since life is notoriously difficult to fossilize, life probably began significantly earlier than 3.5 bya- that's just the earliest date we have for fossils. It took another billion years to get anything with a nucleus in it. It took another 1.3 billion years before we could get anything multicellular. It was another 700 million years after that (500 mya) before we got the diversity of multicellular life and phyla that we have today, and then some. If we're looking at the time it takes, the development of life itself is actually the easiest thing in the world. It is getting something multicellular that's difficult, and even more difficult than that, a cell with a nucleus, guiding all the internal workings. The Intelligent Design advocates are barking up the wrong tree. I need no Designer, Intelligent or otherwise, to make life. That's the easy part. It's the development of a nucleus that's difficult. It's the instant creation of a multicellular organism that would be impressive. That is what I must conclude, in that evolution took so long to form them. Complexity is an inherent function of time and natural selection.

Wednesday, 21 January 2009

"Lord, I believe; help me produce more oxycotin."

Yes, it's been almost two years, that I've let this blog lie. There seemed to be waning reader interest at the time, but I've noticed more comments of late. And I've felt the muse as well, so I am returning to post, on occasion, my musings on the interaction between science and faith.

Recently, World Science published a summary of research on trust in dogs. It's been discovered how "puppy dog eyes" work. The expression in a dog, or anyone else, produces oxytocin, the "trust hormone". If your dog does something bad, and you look at him when he's got that sad gaze, you are more likely to forgive him. His expression has changed the chemistry in your brain, causing you to trust him, and decide that your dog didn't mean it. If you do not look at your dog when he has this expression, then the chemical is not produced in your brain.

Rather intriguing on its own. But I wanted to look at the results for this in terms of trust and faith in God. Obviously, God doesn't provide us with an expression that we can see. But the hormone can be produced in other ways- the key is, the hormone is associated with trust. We know that now, faith is being sure of what you hope for, and certain of what you do not see. Faith is quite clearly a form of trust.

And yet, without faith it is impossible to please God. Not because he's out to come up with arbitrary rules, but rather that he desires the best for us, and knows we will be most joyful if we rely on him, if we trust that he is out for us- which is what faith is in the simplest terms. Happily, even when I lack it, God is still there. If I deny him, he will deny me. But if I am faithless, he will remain faithful, for he cannot deny himself. Even when I lack faith, he is still there for me.

But now we learn that trust- and therefore faith- is something chemically determined. This is not to negate our responsibility, but rather to say that it is something which, to a degree, we have no control over. In truth, it is nothing new to know that hormones influence our emotions. But faith seems to be something so much more than an emotion. And yet, I must rely on my oxycotin levels in order to fully have it.

Perhaps this is the reason for the prayer of the father with the possessed son, a prayer echoed down through the ages, in the masses of the faithful, "Lord, I believe; help my unbelief." There is a level that we can believe to. But not on our own. Even that is beyond us, without help. We must have faith - trusting in God to help - even to get more faith. And now we know what we are asking for.

And so, please pray with me now: "Lord, I believe; help me produce more oxycotin."

Monday, 5 March 2007

Every Death is Remembered

This week is regrowing spinal tissue; a strange new gash in the seafloor; how red makes us do poorly on tests; believing in an angry God makes angry people; a pandemic currently among bees in America; and the giant particle smasher which is the center of our galaxy. While admittedly the angry God motif is intriguing and perhaps one I'll need to return to, I've decided to focus instead on cosmic death rays.

My thoughts these past few weeks have been greatly informed by Keith Miller's Perspectives on an Evolving Creation. It is nearly axiomatic that death is part of our religion, probably more so than any other. Without the presence of death, the cross is meaningless. Somehow, and theologians get to argue how ad nausea, the voluntary undeserved suffering and death of one man allowed me to have life, and have it abundantly.

I've been reflecting on how this isn't really a new idea. His death brought forth life par excellent, yes, but the foundation for it was present long before. Everywhere we look in creation, death brings life. It is only by the death of millions of microbes that I can live, or the death of a few big oxen that end up on my plate. Cells had to die in order for me to first form in my mother's womb. Because of limited resources only a certain number of organisms can survive in any particular environment. As some die, others are able to develop into the new spaces, and develop into new ways. Jesus referred to this idea when he said that "unless a seed falls to the ground and dies it can not produce life". He calls us all to give up the old man or woman, to pick up our crosses, and follow Him. I think God set up the principle for the last few billion years, that it would be abundantly clear in every area of life, so that we could finally embrace the soteriology that Christ's ultimate death brings ultimate life.

Then today I read of a new type of gamma ray bursts, greater and therefore more deadly than anything else seen before. It is hypothesized that they could completely wipe out even the most hardy life if they occur close enough to a planet with life on it. And we can see the bursts at least daily somewhere in space.

What kind of God does this? What kind of God incorporates cosmic death rays into His creation, and death into the basic processes of life?

I don't know. I'm not going to try to answer all of the problem of pain here. But I think part of it is that there is something in the very nature of things that allows for life to come from death; that sees the value in death for providing a new formulation and a new creation. This is the mystery of the cross- a good man could die, and so save everyone else, conquering death.

But there is a another mystery here. Another hypothesis is that one of these gamma bursts actually did hit our planet, back in a time period called the Ordovician, 450 million years ago. It was the third biggest mass extinction in our planet's history. (We're currently going through the largest.) It had nothing really directly to do with us humans, the pinnacle of creation. Most of us don't know anything about this extinction, or all these amazing and diverse creatures that once lived at that time, on the land and the seas.

But God does. And I think that's the point. He is aware of all of His creation. He knows if a sparrow falls to the ground and dies. He cares if it dies from falling, or from cosmic rays. He cares about a trilobite dying 450 million years ago- however it died. He is the Great Empathizer, feeling with the pain of all of His creation.

Laurie Bratten points out in Perspectives that this creation is made for God, not for us. Yes, as far as His creation goes, we're pretty special. But we're not everything. Babel should have taught us that. (Although it didn't.) As God tells Job, "Who cuts a channel for the torrents of rain, and a path for the thunderstorm, to water a land where no man lives, a desert with no one in it, to satisfy a desolate wasteland and make it sprout with grass?" He is aware of every aspect of creation, and intimately involved in it- whether or not we are aware of it now, or ever will be. He knows what happens to the trilobite, and orchestrates the ecology of a sea long dead and disappeared, before we ever came on the scene. There's something humbling in that- that there is so much out there that we as humans will never know, for His creation is just too vast. It is not made for us, but rather for His glory.

When I think on what He has made, and all the years of work He has put into it, I worship my Creator. None can compare to Him, none can even begin to approach the richness of his awesome power and imagination. He has made a universe, and it exists in simple monument to His glory.

Thursday, 22 February 2007

War Dance, It's a Sin

According to World Science, playing video games makes for good surgeons (which we already knew from watching Scrubs); archaeologists are rethinking how important the Clovis people were in Native American history; birds plan what they're going to eat (or at least scrubs do); and there's a new genetic link to autism (again). Oh, and we found some wild chimps who came up with the idea on their own of making and using spears to hunt other animals.

That's kind of big, actually. It used to be we were the only ones who made plans as a species (those scrub jays proved us wrong there). It used to be we were the only ones who built homes (bowerbirds). We were the only ones who used language- except for animals too numerous to mention. But at least, please God, we are the only ones who develop our own weapons of warfare? Please, at least we are unique in this respect?

No, looks like others can do this too.
Pan troglodytes has been found doing the nasty, finding new and inventive ways to kill others. They appear to have figured this out without any human help (although room must be given for the possibility of them observing humans). This particular tribe of chimps cuts off branches, sharpens them with their teeth, and then goes on hunting parties, which are at least occasionally successful, having killed a bushbaby, a relative of the chimp. They don't just go after rats or pigs, they even attack their own relatives. Just like us. Next thing you'll know they'll be writing their own blogs.

The article discusses how this has far-reaching implication for how we understand our own evolution. Tool use has been thought to be limited to the genus Homo, based on archeological evidence. But if Pongidae can use tools, then perhaps tool use was far earlier, with Australopithecus. After all, all fossil evidence is very limited, and tells an incomplete story. Additionally this particular chimp tribe was composed primarily of adolescent and young adult spear-hunters, whereas most chimp hunters are older adults, bolstering the idea that innovative ideas are learned quicker by the younger generations. And the spear-hunters are mixed gender, unlike most chimp hunters who are exclusively male, indicating that perhaps the first tool inventors were of both genders, as other evidence also indicates.

But besides this being a blow to our ego in uniqueness, this discovery also might have something to say about the nature of evil and warfare. In the Genesis myth the humans are cast out of the garden for eating of the Tree of the Knowledge of Good and Evil. It had a long name, and justifiably so. But we usually truncate that name, wanting to call it the Tree of Evil. I think there is a valuable point in the long name. It was when we humans were able to distinguish good and evil, as God makes a point of later in the story, that we also were capable of sin. And the ability to distinguish good and evil requires a certain higher reasoning, a certain cognitive development. To know that this or that action is absolutely wrong, or absolutely right, means I have to have a certain level of thought. Before that point, the action is morally neutral.

It might be argued that a dog knows if it's done something wrong. But the dog knows it's master believes something is wrong, or right, and learns to internalize that. Don't eat the master's children. That's bad. Doesn't matter that my wolf ancestors might have done that, if I do it, I don't get food, I sleep outside, or I get killed. It learns new rules. But the dog is simply incapable of understanding the more abstract notion of an absolute right or wrong.

If I lack a certain level of thought, I can plop my children in another live being and have them eat that other being alive as much as I want. I am not sinning. I simply don't know right from wrong. I can have sex with my sister while still inside the womb, and then die, and my children do this over and over again. It's not wrong- there's no brain, and certainly no higher thought involved.

But the moment I reach that point, that magical level of thought, be that in the Upper Neolithic, or the beginnings of Homo sapiens, or when Hominidae first arrived on the scene- whenever that happened- I knew good from evil. The moment we were this aware, we sinned. Sadly, simply on this level of reality, intelligence could not be divorced from sin. For we were aware of the difference between the two, and we always end up choosing, at some point, no matter how insignificant, sin. We choose to miss the mark and turn from God and good.

The chimpanzees invented spears. They're hunting another species, but another primate. In all the millenia of chimpanzee evolution, odds are they've done this before, if they came up with the idea now. It's not necessarily a new idea with humans. The chimpanzee might use the new invention on each other, as we once did. After all, there are attacks and infanticide and matricide and all kinds of killing among wild chimpanzees- including clan warfare. Spears would just give an edge. But there is a difference. When we do it, we know good from evil, even if we've forgotten. When we invent gigantic spears that can fly across the Atlantic and impale hundreds of thousands in a single flash, we know what the evil is, and what the good would be. The chimpanzees don't. They operate out of forethought, and a certain degree of intelligence, but they have not learned the difference between good and evil. Likely the ability to invent spears was there before we reached this cognitive development point. Likely we even invented spears and attacked other clans with them. But at the point when we first learned enough to know good and evil, we also learned it was wrong, and it became wrong.

And likely the same moment when we could reason well enough, when we reached the ability to sin, is when we also were designated in the image of God, capable of fully cognitively worshipping the Creator.

Friday, 2 February 2007

Beware Roving Packs of Rat Sperm

This week's World Science download was replete with wonders. You might have seen this on the evening news, but we found the probable village of the creators of Stonehedge. Scientists are urging robots to dig deeper for life on Mars, as it's more likely to be found where exposure to radiation hasn't damaged spores over the last billion years. Vomiting is found to be the most horrible sound (but in a horribly flawed study of online users self-evaluating what sounds they dislike the most). Gastric cancer probably killed Napoleon. And really cool- an early dinosaur probably didn't fly like a dragonfly, but rather like a biplane- with four wings!

And packs of rat sperm might work together to compete against sperm from other males. That's just a beautiful sentence. Because mice and rats reproduce so much, often more than one male's sperm can be found in the vaginal canal of the female. And because their sperm have a hook on the head they can link up together in giant balls, which allows them to swim faster and stronger. Then one individual spermatozoa in the sperm ball will reach the egg first, and his brother sperm die off, sacrificing themselves for the sake of their brother, and winning against the sperm of another male rat.

Altruism is always a sticky point for evolution. If the foundation is that you compete to carry on your genes, then why sacrifice your life for another? If there is a sacrifice, then often we try to find out why, explaining it away as trying to continue on your genes. So every ant in a colony is more closely related to it's sister ant than to the queen, and so they are more likely to fight to defend each other, as that will carry on their genes.

Is altruism really so amazing though? In most cases, in the animal kingdom and among humans, altruism occurs firstly to those within your family, and then to those further afield. It is almost always only expressed towards one's own species. In the case of humans, there is the added dimension of a mind, capable of reformatting the definition of family to include those in a community, the entire species, or even those like dogs and cats, of other species.

Lions therefore have been known to sacrifice their opportunities to reproduce for the sake of others in their pride. But again, they are at least distantly related to those in the pride (and usually as close as brother and sister), allowing for part of their genes to continue. But is it really so surprising that an evolutionary mechanism could have developed to continue on offspring that are not directly your own? Imagine for a moment where a mother produces offspring that are inherently sterile, but who assist the reproductively viable offspring. Would not the viable offspring be more likely to live, thereby continuing on the genes to produce some offspring that are viable, and some that are sterile?

For a long time biology has been focused on competition- and rightfully so. But what about the amount of cooperation that also occurs? Could not this also be guided by evolutionary mechanisms of natural selection? Joan Roughgarden asks these questions in Evolution and Christian Faith, an excellent look at the relationships between Christianity and evolution. He suggests that evolution is indeed an imperfect theory (as all scientists would agree), but that it could be drastically improved by focusing on cooperation.

Would it be heretical to say that perhaps biology has been too masculine in orientation? Of course there is no way to state how men and women are- we can only speak in generalizations. But science has long been a strongly male domain. I found in my experience the only exception to that was in marine biology. Although a generalization, it does seem many psychological studies indicate that human males like to compete. And although there are certainly exceptions, and new studies have been looking at the prevelance of female bullies, it does seem like human females tend towards cooperation. Could it be that scientists have simply ignored data because of a general predeliction towards certain values? It wouldn't be the first time. Those of us who are racist saw the data indicating that whites were superior, because we wanted it to be there, ignoring contrary data that didn't fit with our desires. Lynn Margulis was finally able to prove that mitochondira developed from endosymbiosis, a cooperation between two very different species- but she had to fight for years before she was accepted, and for a long time was laughed at in the biology world for the idea that organisms could cooperate like that.


Dr. Roughgarden points out that one of the biggest reasons Literal Creationists have a knee-jerk reaction to evolution is because of the idea of competition, in that it goes so much against the grain of Christ's teachings. And indeed it does, unless we expand and redefine genetic similarity to all those within the Church, and all humans. We certainly wouldn't want to change biological facts to fit the belief systems of a particular religion. But what if there actually is more of a fit than we normally credit? What if, in addition to competition, cooperation also rules the biological world? Our own bodies not only harbor numerous parasites, but also symbiotic bacteria. Again, the very mitochondria of our cells were once separate prokaryotes. However multicellularity arose, it involved the merging of various cells. Today the cells of our bodies cooperate with each other. When they don't, we have a word for it. We call it cancer.

These rat cells may be only a more overt demonstration of how individuals work together. It may be that the ethic of evolution involves not only "red in blood, tooth and claw", but also profound cooperation, and self-sacrifice. If so, the research has only begun.

We learn in Sesame Street the value of cooperation. We also learn that in the nature of God, who has always been eternal Love. Love requires a lover and a lovee, and we see the explanation of this in the doctrine of the Trinity, wherein God loved the other of Himself for all preternity. He taught us the value of this through community in the early Church, where all gave up what they had and shared it in common, so no one was in need- but everyone had houses, lands, brothers, and sisters 100-fold. In the same way I grew up with limited private property, sharing all in common with 80 others, and with 20 houses and cars and countless brothers and sisters. Self-sacrifice through cooperation is an enduring ethic of God. And it would seem that He placed at least some of the ethic within His creation, even down to the level of rat spermatozoa.

Tuesday, 2 January 2007

A Bird in the Fist

Nothing really grabbed my attention this time around. But I remain committed to the Method. So, World Science posted articles on the diversity of comet dust; Bush's rather surprising decision to label the polar bear as endangered, meaning that oil drilling could be curtailed in the Arctic areas because of global warming, rat dreams, a hormone that increases trust and mind reading, and the one I was thinking on, how we (mammals) might have flown before birds.

Turns out the article is talking about gliding more than flying, and the animal looks suspiciously like a squirrel (but it's in a different order), so I guess I don't feel the shivers down my spine upon reading this. But it's interesting to note how important it is for us. That no matter what the outcome or meaning of the article, it grabs the attention because it's a mammal. We tend to be quite biased in this matter- something Stephen Jay Gould (pbuh) often pointed out. Anything mammalian, or remotely mammalian, gets higher focus and interest. This is certainly true in the popular press and imagination, but even creeps into scientific journals. I suppose this should be no suprise, as the money for scientific research has to come from somewhere, and that's usually not scientists. But also, most scientists tend to be mammals. We care more about those that are similar to us. We care to such a great extent we even extend that maxim to subgroups within our own species, to our detriment. It's important to learn about the earliest flying mammal because it has mammary glands (well, half of them did), hair, live birth (again, half of them)...Better yet, what if we got there before that other group, that has the audacity to do something we can only dream of doing without machines, and we got there before them in the very thing they have the cheek to crow about so much?

I'm reminded of something Van Baer described, that early creationist who first pointed out similarities in embroys between different species. (It was a time when all evolution was believed to progress in discrete lines, so pointing out similarities between species would actually be an argument against evolution.) In 1828 he described a situation where a conference of birds were discussing those horrid mammals. They might say that "'Those four and two-legged animals bear many resemblances to our own embryos, for their cranial bones are separated, and they have no beak, just as we do in the first five or six days of our incubation; their extremities are all very much alike, as ours are for about the same period; there is not a true feather on their body, rather only thin feather-shafts, so that we, as fledglings in the nest, are more advanced than they will ever be . . . And these mammals that cannot find their own food for such a long time after birth, that can never rise freely from the earth, want to consider themselves more highly organized than we'?" It's all a matter of perspective, and bias.

This World Science article is interesting to most of us, and to me, simply out of old-fashioned patriotism. I value the mammals more. Doesn't matter that personally I find invertebrates infinitely more fascinating. Some part of me wants to be the first in the air- or at least to have some part of me having been the first in the air. I always want my group to be first, no matter how I struggle against this desire. It's in my genes, after all- my group first means my genes go forward, in some sense. Perhaps that's the final explanation and cause for all the strife that we have. Our quarrals and fights result from the desires that war within us, for we ask with wrong motives, that we might spend on our own pleasures- the greatest pleasure of all, to have us, our group, supreme. Perhaps then it's the final call, to go beyond our naturally selected drive, and come to the place where we are satisfied immensely, eternally, if the other guy wins.

Thursday, 30 November 2006

I've got an agenda.

Quite a plethora of interesting studies came down the wire today. Studies included a 2000 year old computer recently discovered and that sitting up straight is bad for your back. Success is linked to genetics, although the authors of the study equate success in general with money. (Considering my heritage, this doesn't bode well for me.) And our DNA may be able to tell us the likelihood that a wife will cheat on her husband. My particularly favorite quote from the last one: In oth­er words, if the man and woman had half the genes in com­mon, the woman would have on av­er­age near­ly half a lov­er on the side. Ah, yes. Half a lover. Those were the days.

But today we'll look at the accusation that the NSTA, the National Science Teacher's Association, refused to accept free copies of An Inconvenient Truth because of oil influence. I find this article interesting because just last night, before I'd read the download, I saw Jay Leno joking with Al Gore about this very issue on the NSTA. Secondly, the NSTA has been a very valuable organization, one that I actually consulted last year when looking for guidance as a science teacher. And lastly I find the inverse of such accusations now made against me.

The basic story is the producers of An Inconvenient Truth offered 50,000 free copies to science classrooms around the nation, through the NSTA. If you haven't seen this movie, you should. It is truly one of the scariest movies I've ever seen. It isn't the most well-made, but it lays out the facts neatly and cleanly, in a format more clear than I've ever seen it, so that all can understand what's going on. After watching it many have suggested it should be shown in science classrooms. So for no charge, Gore offered the movie so students could learn about this. He is even doing something unheard of in the film industry- the movie producer is encouraging people to buy the movie and then give it away to a friend, so that as many as possible can view it, though with reduced proceeds for the movie.

The NSTA turned down the offer. They said that they were concerned about political endorsement or encouraging special interests to also request film distribution. And they also said that it would cause risk for certain supporters and make it harder for them to raise funds. One of their supporters is Exxon-Mobil.

The thing is many climatologists have endorsed the movie. There is no longer any scientific disagreement that global warming is occurring, or any real disagreement that it's cause is the Greenhouse Effect via human actions. Even the Pentagon has come out in support of this- not an institution known for it's sterling environmental record. But there is one group that has consistently come out against global warming: the oil industry, lead by Exxon-Mobil. This doesn't bode well for the purity of the NSTA.

It is disappointing to hear about this. Their political or special interest arguments are stronger, but still- there's a difference between politics and issues. Al Gore was once a candidate and politician, but he's not running for anything any more, and not at this time. Unless working to build houses for the poor is a political issue, because Jimmy Carter does it? Politics is the attempt to raise oneself or lower another, to gain influence- but it's about issues. Global Warming is an issue that politicians take a stand on, but it's a serious issue that needs addressing.

But the greater concern is of course the oil influence. Here it appears that the NSTA is taking a political stance, in the true sense of politics- looking for influence and the money that breeds influence. To accept the DVDs would not have been political; to refuse them was.

This has hit home because I have recently been obliquely accused by some of having an agenda when teaching at my old school- specifically supporting evolution and environmentalism. Basically it's been said that I'm making science political. There has been an expressed desire by some at my old school to make sure future biology teachers don't have these biases. I find this ironic since teachers there were repeatedly encouraged to ingrain positive civic values in our students.

I had to leave the position over the issue of teaching evolution as the backbone construct of all biology- what all scientific publications agree with. But of all the moral issues out there, the one that comes closest to the heart of the biologist is naturally environmentalism. We don't get to really discuss social issues like racism or treatment of women or caring for the poor. Those are important, but they just don't easily fit into the scientific curriculum. The environment does. If it ceases to exist, I'm out of a job. I'd be hard pressed to conceive of a biology teacher who wasn't an environmentalist. It'd be like being a vet who hated animals, or a car repairman who insisted that the only way to get around was by bike.

It is personal for me, too. I wouldn't teach this in the classroom because it's religion, and my own beliefs, but my feelings on the environment aren't merely that life is wonderful and amazing, and should continue. It's not simply that I want to continue to have life. It's that I believe God commanded it, in the garden, when he called us, as the very first command, to care for it. The Psalmists repeatedly cry out at the beauty of this creation, to give honor to God. Biology is wonderful because it reveals some of the Creator.

Environmentalism is the ethic of trying to preserve the environment- the ecosystem. I want to help keep it around so we can discover new medicines. I want to make sure the food web continues so we can survive as a species. I want to enjoy studying it. I want to help preserve it because God made it. But most of all, I want to keep it around because it is worship, to study it, and see the unique ways God put it together, the myriad evolutionary interlocking paths in the ecology revealed to us. It is a way to glorify God.

But I wouldn't teach all that. I separate my personal views from the classroom, from science, and responsible ethics. A student needs to learn how biology happens. I would hope they develop an ethic to care for the planet. How they arrive at that ethic is their own concern.

As teachers we walk a find road. We don't want to unduly influence, and we certainly don't want to teach religion. And yet civic values are also taught in school- indeed, it is often the primary medium. It might be an ethic of sharing in preschool, or learning to not cheat in junior high- but it's taught. And make no mistake- those are values- ones that many culture, most cultures, agree to, but not all. How we come to those values being positive varies among individuals and cultures.

We all have an agenda. Every moment of our lives, we walk with agendas and beliefs. What is in contention at my old school, or with the NSTA, is rather the nature of the agenda: which agenda is positive, and which is negative; which should science support, and which should it deny. The issue before me and the NSTA is the agenda of the environment. Is it the natural stance when teaching about biology to support the environment, and work to preserve it, and encourage that preservation ethic in the students. A biology teacher, or association like the NSTA, is at fault when they do not pursue these ethics.

I've shared a number of practical and more ethereal reasons why this ethic is important. Global Warming in particular is going to have disastrous effects on our people, increasing extinction, raising water levels, increasing storms, killing thousands of people, and leading to hundreds of thousands of refugees (in the most conservative of estimates). I could go on, and others have. This is the single greatest environmental catastrophe we have ever faced as a species- greater than those comparatively slow-moving ice ages that came and went. And therefore it is the single greatest application of the importance of teaching an environmental ethic.

But let me leave you with one final example of why it should be taught. Shortly after coming into office, George Bush met with "an unnamed expert", and decided to withdraw from the Kyoto Accords. It is rumored that this same expert is the one he met with in 2005, one Michael Crichton, who wrote a fictional piece called State of Fear, which suggests that Global Warming is false, but that the effects are being caused by a mass conspiracy of scientists. The only problem is that Michael Crichton has then repeatedly publicly said he believes much of this. And Bush stated he was much in agreement with Crichton's views. This, from an administration that has one of the worst environmental records in history, is close friends with Big Oil, and has done nothing to try to stop Global Warming. What might the world be like if Michael Crichton, or George Bush, had learned more science, or developed more of an environmental ethic, when they were in high school?

You better believe I have an agenda.

Saturday, 25 November 2006

Race Is

Pot is bad for you, and good for you. In doses smaller than a joint, it's bad; in large doses good- but all pot degrades into smaller doses. They're working on the first quantum computers. We may be able to make hearts from one stem cell from a baby. Molecules provide an anchor for memories. Black holes spin really fast. And the article for today's musings: race seems to be based on DNA .

Geneticists have found that humans can vary as much as 12% in their genetic code, putting paid to the notion that we are 99.9% identical. That idea of mass similarity seems to have no scientific merit, as attractive as it is. About 12% of our DNA varies in the number of copies it has- and this tends to correspond with the ethnic group self-identification of individuals. Basically there are genetic differences between those of European, African, and Asian descent. And this isn't a crack-pot study- it's the third study recently to indicate massive differences by race.

How does this work, considering recent studies have indicated that we are 97% the same as chimpanzees and 99.5% the same as Neanderthals? How then can we as humans be 12% different? As I understand it, our DNA between one human and another is still much more similar than between us and another species or subspecies. We still have a much smaller genetic diversity than most species, indicating perhaps a historical bottleneck. However, up to 12% of our DNA varies- and this corresponds to traditional racial classifications. It's been long known that there are differences in certain points, such as the African-American heightened tendency towards sickle-cell anemia. But this is the first study to quantify the difference to such a great degree.

What it doesn't indicate: that one group is superior to another, or that genetics are the big deal. As the study mentions, wolves and dogs are almost completely genetically the same, but they act and look far different. Culture and gene expression both play a role in differences.

And yet, this should come as no suprise. It is standard evolutionary fare: a population breeding separately with another population will start to build up genetic differences. Indeed, this is how we are able to determine that the Austrailian Aboriginals isolated themselves from the rest of the species long ago, 30,000 years ago- the oldest isolation split we know of. The longer a group is isolated, the more different one would expect the genes to be, leading eventually to a speciation event.

Perhaps there's something here to celebrate. And to learn. We are different, yet equal. It's hard to grasp. But it's what we find in the Garden. Eve is created as a help-meet, equal to Adam. And yet she is far, far different. God calls the most different, male and female, to learn to love each other. Love is not easy, and it's not supposed to be. It's harder especially to love those that are different. It's far easier to love myself, or at the very least, my clone. I think that's a big reason why God calls us to love a woman- to learn to love the different.

And now we see how this opportunity is present in groups of people as well. Not only are they different culturally, but also biologically. Yet just like men and women, no group is inferior or should be subservient to another. We are suddenly impressed with the huge realization that "those other people" are really different. And equal to me, both spiritually and hopefully in the world of human affairs. It's no longer a matter of my group being better, or pretending that we are all the same in a giant melting pot. I now have to learn what true love is- loving the different. I now have the opportunity to struggle through that to reach true love.

Perhaps one day there will be discovered that there are certain genetic tendencies that make one group better than another in certain areas- stronger legs or some such. But probably at that point we will have reached the future state that everyone is predicting- through interbreeding we are all dark-skinned, with those recessive traits of blond hair and blue eyes nearly bred out of existence. It's through the process of loving the different that I discover my basic similarity to them.

Saturday, 18 November 2006

Who's Your Daddy?

Today's World Science revelations included Spider Monkeys having developed a natural perfume based on leaves (naturally used most often by the males); dark energy has been around for a long time and is causing the universe to expand at an increasingly fast rate; red wine is good; and new subatomic particles. I'll be focusing on the sequencing of Neanderthal DNA.

This is pretty cool stuff. Based on a Neanderthal thigh bone they have found a genetic similarity between us and them of 99.5%, although in many places they are more similar to chimpanzees than us. (By comparison humans and chimpanzees differ by 96%, and rats from mice by ten times that amount.) The DNA shows that the last time we had a common ancestor was 706,000 years ago, and that our DNA hasn't mixed for the last 330,000 years. (The last time chimps and us had a common ancestor was 6 million years ago.)

We, Homo sapiens, arrived in Europe between 40,000-50,000 years ago. Neanderthals disappeared completely between 33,000-24,000 years ago. And ever since then scientists have wondered why.

There's been two primary hypothesis. Firstly that we killed them off. This makes us somehow better adapted to the climate. We didn't necessarily have to kill them off through warfare- it could have been that we simply outcompeted them for space and food, though some studies indicate signs of violence on Neanderthal bones. Perhaps the change in climate at the time was one that Neanderthals were pre-conditioned to not be as adaptive to, but our Cro-Magnon ancestors were. If this is the case, then they are a separate species at the end, with no mixing between us, and should be called Homo neanderthalis.

The other option is that they disappeared through sex. Or rather, that they are still with us. We interbred with them to such an extent that their genes merged with us, and traces of Neanderthals still remain in modern humans. In which case they would be a subspecies, and properly called Homo sapiens neanderthalis. Of course, this wouldn't exclude the possibility of Homo sapiens sapiens (us) killing off large portions of them as well. And in either scenario, we once were of the same stock- the species concept is somewhat arbitrary, as it is always in a state of evolving flux. We can only say that if an animal can't, or doesn't, interbreed with another animal, it is of a different species. (Higher taxa are determined in a far more general manner, losing even this minimal definitiveness.)

This study indicates that the killing option was more likely. If the last time our genes were the same was 330,000 years ago, this was a long time after we diverged as modern humans, 130,000 years ago. Therefore we weren't around to interbreed with the Neanderthals at the time our DNA indicates similarities. However, other recent studies of the DNA of the very same bones indicate great similarites between the two lines, indicating continued sexual activity between the two groups.

The data is therefore still indeterminative at this point. However, the earlier study indicating sex between the two parties used a method that some say results in incomplete results mixed with intrusive DNA. This same analysis suggests that the difference between human and Neanderthal DNA will show to be less than that between the highly diverse African human populations. I'm personally rooting for the sex option, and I still have hope that it becomes the final conclusion. Probably a big part of this is my natural liberal bias- "Make love, not war" and all. Just a much more romantic notion to think that they disappeared that way, rather than us committing, however inadvertedly, the first and greatest mass genocide of our species. It doesn't help that the ones possibly committing this were my European ancestors.

But there are other reasons to hope for this. We know that Neanderthals had tools, cared for their injured, made art, abstract thinking, and probably buried their dead. This means something pretty far advanced. And however one determines the presence of the soul, life after death seems to be a big part of that, as it indicates the presence of a belief in the afterlife, and therefore some sort of religious belief.

Even more so, Neanderthal brain cases were larger than our own. They were also larger in body, and their brains were structured differently than ours- but there is the possibility that they were actually smarter. Solid evidence indeed that a bigger brain is not necessarily a selective advantage. I'd hate to lose out on all of that brain, culture, and heritage, wasted away, without a memory or a presence. Better to hope, however indefinite the evidence is at the moment, that there is a bit of Neanderthal in me, and you. Better to take the opportunity to glory in the compliment of intelligence, the next time somebody calls you a Neanderthal.

Tuesday, 14 November 2006

In the Beginning

New ways to remove radiation from humans; gays are more likely to suffer from addictions; what causes SIDS; and how pollution makes people stupider. This is particularly true for those born between 1960 and 1980, because of exposure to lead in gasoline. Bummer. Evidently this population has had marked increased in retardation and autism, decrease in attention span, and half as many with an IQ over 130. That's just really depressing.

But the article I'll focus on is some intriguing experiments looking at similarity between Saturn's moon Titan and the primordial atmosphere of Earth. Chemists have reproduced Titan's methane-nitrogen atmosphere with the application of UV light to create long-chain hydrocarbons, and astronomers have noticed these same chemicals in Titan's atmosphere. Similar chemicals are created with a methane-carbon dioxide base, the posited primordial Earth atmosphere.

The origin of life is problematic, for a few reasons. One, it's important to biology, but it's not really biology. There's no genes yet, there's no reproduction- it's the beginning of all that. So it's not really the biologists who are experts in this; it's more the chemists. And of course, it's hard to get data on it, and we still don't know a lot about how it all started. In truth there is no theory yet for this part- it's only different hypothesis. Lastly, it seems to have happened only once.

One hypothesis is that God created everything like Q, with a snap of His fingers. Not a scientific hypothesis, but it's there. And it could have happened. I can't think of any alternate scientific hypothesis that can reject it at this point- we just don't have enough evidence on how it happened through natural means. But I can think of a couple good theological reasons why it didn't happen that way.

The Literal Creationist and Intelligent Design hypothesis due injustice not only to science but also to religion, specifically Christianity. For they posit a weak God. As with the title of this blog, their God is too impotent to be able to do a complex creation- the creation must be made ex nihilo in the blink of an eye. It has none of the beautiful complexity of a multi-evolving community.

But even more, it does injustice to the concept of a miracle, and therefore of God. We repeatedly see God doing miracles for a purpose. They are signs, to point the way. They are not to prove the existence of God- nothing can- but rather signs to help us understand the nature of God. So I ask. Who exactly were these early supposed miracles for? The dodo? Triceratops? Sea Scorpions? No, it was far earlier than that. Not even the Archaea, those oldest and perhaps most primitive of bacteria, are around to see the beginnings of life. All we have are the rocks as silent observers. The argument that these were signs of God's existence for humans millions (or thousands) of years later is far too weak, for the signs left for us are far too inconclusive. In the case of evolution, there is too much evidence to the contrary. But for both the origin of life, and evolution, and anything else, there is not the clear overriding evidence to support a Q-snap for a creation event- which would be required if this were a sign for things to come- namely us.

As to it being a sign to help us understand God, I'd ask what does it reveal of God to say he creates in a moment, rather than through a process? That actually leads to some excellent discussion, but for another time. But such can not be an argument for Literal Creation vs. Evolution- it is rather that, once we understand the process, we can better understand who God is.

The final reason why God would not have created life in a supernatural event is that it limits God. It is the limit of the God in the Gaps, which ultimately does more injustice to God than it does to science, although it does great injustice to the latter as well. For it limits God. It puts Him in a box, saying He can only operate at certain times. It is a miracle, when we can't figure out how it might have happened. Then God steps in, and "poof", there is an elephant. Or an eye. It says God can't create through natural means- he must resort to being The Great Magician. But God uses miracles for a reason, not just for fun. If we believe what the Bible indicates.

The Literal Creationist hypothesis therefore ultimately reduces the intimate presence of God. We learn nanini, nanini na- God is everywhere. He is not all things, but He is in all things. He is a part of it. In Him we live and move and have our being. The existence of anything, by any process, is a miracle. Yet according to Intelligent Design, God created at only certain points, when it was too complex to do otherwise, and everything else evolved. So God is somehow less present in certain moments of creation. It is less of a creative event if it happens through evolution; it is less fully God.

That's not the kind of God I'm interested in. I'm interested in a God who is intimate in every moment of creation, who is intelligent enough to design a system that boggles the mind. Miracles do not happen because God must do them, and the natural processes He designed will not suffice. They happen so we can know Him.

So, I reject the premise that the formation of first life happened through a Q-like miracle. It was certainly a miracle, but one that occurred through natural means. What those natural means are...I'm not telling. We truly don't know yet. But science is philosophically naturalistic- it must use the same system for understanding the natural world. Otherwise, whenever we don't understand something, we simply stop working, and chalk it up to an act of God. Which kind of grinds things to a halt. Killed someone recently? Use the "God-made-it-appear-like-me-but-it-was-someone-else" defense. Works every time.

The formation of first life can't have occurred through a supernatural event, primarily for theological reasons. We don't yet have all of the evidence for the natural formation, but based on the beginnings of it, I'm sure it will eventually come in.

Science does very well with the repeated event. Not so well with the event that happens only once. And the formation of first life appears to be the singular event par excellant. Or is it? Was life formed once, or multiple times? I'd say the evidence is fairly clear that it formed only once. All life portrays certain similarities. We have the same base pairs on DNA (or in a few cases like HIV, RNA), leading to the same proteins. Statistically, it didn't have to happen that way. If life had formed a few times, you would expect differences in descendants. Even more telling, all natural organic molecules portray the same chirality. Molecules can go to the right or left in their polarization of light- and there's a 50:50 chance it would be one of the other- or they can be symmetrical and not go either way. All organic molecules are left chiral. If you tried to consume something, say on another planet, that was right chiral, or had no chirality, you'd get either very sick, or maybe just die. You wouldn't be able to consume it as nourishment. So it's a good thing all organic molecules on this planet have the same chirality. But since they do, and to be working organic molecules, they could have chosen right or left, this is another powerful argument for a common origin for all life. And since there seems to be no good supernatural explanation (again, in the sence of a Q-like moment) for the formation of first life, even though the formation of first life is a singular event, I would suggest it can be naturally explained.

Of course, we may discover life with the opposite chirality on this planet one day, but for now, we are left with evidence indicating too much commonality in all life. But this begs the question as to why life only arose once.

There's the question on how life first formed. But I have thought recently, there's an even better question on why it formed only once. And why don't we continue to see it arising now? Granted, that might be happening- but we have yet to see it, and if it were occurring, one would think that by now we would have observed it in a lab or in nature. If the conditions were just right for it to arise once, why not more than once? Why not more than once in the Archean Eon, the first biological time period, or more than once and still continuing today? It appears that the conditions of the early atmosphere that allowed the formation of life were anaerobic and involved particular gases and lightning. Such a grouping of events doesn't occur commonly today, with our poisonous oxygen atmosphere. But it does occur in certain places on the planet, or on other planets. If life was so unstoppable that it formed spontaneously before, why not in those places? It didn't even have much time to form- most recent evidence that it was as recently as 3.5 billion years ago there was life, allowing for only half a billion years for life to form after the Earth stopped being molten. This indicates that the formation of life is very likely- it is a probable event. And yet, still, it isn't here, again.

(Note that for the ID crowd, the claim is that life has been created numerous times, and therefore, should be observed now- but they have no good explanation as to why it has not been observed being formed ever in the history of humanity, past myths on spontaneous generation not withstanding.)

I haven't forgotten the main point of this essay. I've just been taking my time getting there. This newest research provides dramatic further answers as to why life hasn't formed again. The chemistry of the early Earth's atmosphere was so radically different that it hasn't been repeated. A methane-based atmosphere, exposed to UV light as it had no Ozone Layer to protect it, could have produced the building blocks of life. But such an atmosphere does not now exist, and hasn't for a long time.

Much more research of course remains to be done, to get from those building blocks to life. We have seen the development of amino acids spontaneously from organic molecules, and spontaneous formation of nucleotides (the building blocks of DNA) into self-replicating RNA. We've known for a long time that lipid bilayers automatically form the cell membrane. But there remains a lot of research to be done to get from there to a functioning cell. And left a mystery is why life didn't evolve more than once in that original atmosphere. Of course, perhaps it did, and the other forms were unable to compete with our ancestors.

Often it is claimed that there are gaps in the evolutionary lineage. I am impressed at how, again and again, evolution will predict an outcome, and the evidence will eventually be found- very similar to the process of Biblical archeology, which is also often gainsaid. Just as evolutionists for a century and a half were attacked for lacking the evidence for the fossil record of whales, and we now have a complete record, so the predictions of the origins of life are starting to fall into place, one molecule at a time.
This is the discussion of the World Science updates as they become available.
Your thoughts are most welcome here.